The only easy way to check the alignment is to assemble and tighten one pipe at a time, that way you can see which direction the pipe moves to in relation to the mounting bracket behind the kickstart cover. Put a piece of masking tape along the bottom of the timing cover, then once the rear pipe is in place, you can draw some marks on the masking tape with a texter pen, then compare this to the joint on the front header pipe. You will struggle to get it all perfect, as changing the flange angles is not very easy, but that is what the gaskets are for. But you can get a good result with some patience, and it may just save your exhaust threads a lot of grief as well..........just another tip.........On some pipes, the angles can be a bit tight where the pipe goes through the nut, I have found that if you open up the nut on the inside with a rotary burr, this makes a huge difference to gaining a bit more clearance, especially when starting and doing up the nuts, the less effort required here the lesser chance of thread damage. Cheers..................Greg.